miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Branchiostoma floridae



ABOUT THIS RECORD

ID: MNEST024642
species: Branchiostoma floridae
miRNA family: let-7
source: miRBase, original name: bfl-let-7a-2 (MI0010007)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGGTTGTATAGTT

miRNA*
CTGTGCAACCTGCTAGCTCTCC

mismatches: 2
bulges: 0

View larger
pre-miRNA
AGACACGGGTGCACCTGAGGTGAGGTAGTAGGTTGTATAGTTGAGAAGTACATCATTGGAGATAACTGTGCAACCTGCTAGCTCTCCTTGGGGCATGCC

dot-bracket secondary structure
......(.((((.((..(((.(((.((((((((((((((((((.......((....))....)))))))))))))))))).))).)))..)))))).).


SIMILARITIES
miRBase bfl-let-7a-1: 4e-19

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 5e-37

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




Liczniki na strone;