miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Branchiostoma floridae



ABOUT THIS RECORD

ID: MNEST024663
species: Branchiostoma floridae
miRNA family: mir-34
source: miRBase, original name: bfl-mir-34d (MI0017678)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGCAGTGTGCGCCTACAGCTGA

miRNA*
ACTGTACACACTCCCAGC

mismatches: 2
bulges: 5

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pre-miRNA
CCAGCCCGCCAGTTTGGCAGTGTGCGCCTACAGCTGACCCGGTATGACCTCACGGGCCACTGTACACACTCCCAGCCGGGCGGGTCAA

dot-bracket secondary structure
...(((((((.(.((((.((((((....(((((.((.((((...........)))).))))))))))))).)))).).)))))))...


SIMILARITIES
miRBase bfl-mir-34e: 6e-39

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"




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