ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: mir-25
source: miRBase, original name: bfl-mir-92a-1 (MI0010022)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTGCACTTGTCCCGGCCTTT miRNA* AGGTCAGGATTGGTGGCAATGCT mismatches: 3 bulges: 1 |
pre-miRNA
CACATATTGTGCCCTGTCAGACAGGTCAGGATTGGTGGCAATGCTTATAAACGTGTCAGTATTGCACTTGTCCCGGCCTTTCTGATTGGTTAAAAGTCTG
C
dot-bracket secondary structure
..((.(((..(((..((((((.(((((.((((.((((.(((((((.(((....))).))))))))))).)))).))))).)))))).)))....))).))
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
CACATATTGTGCCCTGTCAGACAGGTCAGGATTGGTGGCAATGCTTATAAACGTGTCAGTATTGCACTTGTCCCGGCCTTTCTGATTGGTTAAAAGTCTG
C
dot-bracket secondary structure
..((.(((..(((..((((((.(((((.((((.((((.(((((((.(((....))).))))))))))).)))).))))).)))))).)))....))).))
.
SIMILARITIES| miRBase bfl-mir-92a-2: 0.00002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-92: 1e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
