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Species belonging to selected taxon:
Branchiostoma floridae
ABOUT THIS RECORD
ID:
MNEST024689
species:
Branchiostoma floridae
miRNA family:
mir-190
source:
miRBase, original name:
bfl-mir-190
(
MI0010033
)
Taxonomy by NCBI:
Branchiostoma floridae
Branchiostoma
Branchiostomidae
Cephalochordata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGATATGTTTGATATTTGGTTGT
miRNA*
AACCAATATATCAAACATATGATC
mismatches:
2
bulges:
1
View larger
pre-miRNA
AAGCACTGTGGTGTTCTGGG
TGATATGTTTGATATTTGGTTGT
TAACTTCTATCC
AACCAATATATCAAACATATGATC
CAAGGCCCCATACACACAGCC
A
dot-bracket secondary structure
......(((((.((..((((
(.((((((((((((((((((((.
...........)
)))))).))))))))))))).)))
))..)).))))).........
.
SIMILARITIES
miRBase
mmu-mir-190b
:
0.0000003
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-190: 9e-42
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"