ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: mir-8
source: miRBase, original name: bfl-mir-200b (MI0010036)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATACTGTCTGGTAATGATGTT miRNA* CATCTTACCAGGCAGCATTTAGT mismatches: 2 bulges: 2 |
pre-miRNA
ACAGTTTGGGATCTCGGCAACATCTTACCAGGCAGCATTTAGTTTTTGAAAGGAATACTAATACTGTCTGGTAATGATGTTGGTGGGGTTCAAACAGT
dot-bracket secondary structure
...((((((.((((((.((((((((((((((((((...(((((((((....)))).)))))..))))))))))).))))))).))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
ACAGTTTGGGATCTCGGCAACATCTTACCAGGCAGCATTTAGTTTTTGAAAGGAATACTAATACTGTCTGGTAATGATGTTGGTGGGGTTCAAACAGT
dot-bracket secondary structure
...((((((.((((((.((((((((((((((((((...(((((((((....)))).)))))..))))))))))).))))))).))))))))))))...
SIMILARITIES| miRBase sko-mir-200: 0.000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-8: 8e-36 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
