ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: mir-4872
source: miRBase, original name: bfl-mir-4872b (MI0017631)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCGGGGCAACTAAAACTCTG miRNA* GAGTTTTGTTACCCCGGCTCT mismatches: 2 bulges: 1 |
pre-miRNA
TTTTCGTATGCGGTGCCGGGGCAACTAAAACTCTGAGTTCTCTTAGCCTCAGAGTTTTGTTACCCCGGCTCTCTGTGGGACCA
dot-bracket secondary structure
...((.((((.((.(((((((.(((.(((((((((((..........)))))))))))))).))))))).)).)))).))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
TTTTCGTATGCGGTGCCGGGGCAACTAAAACTCTGAGTTCTCTTAGCCTCAGAGTTTTGTTACCCCGGCTCTCTGTGGGACCA
dot-bracket secondary structure
...((.((((.((.(((((((.(((.(((((((((((..........)))))))))))))).))))))).)).)))).))...
SIMILARITIES| miRBase bfl-mir-4872a: 0.00000000002 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
