miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002427
species: Raphanus sativus var. oleiformis
miRNA family: MIRf1281
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTGTTTGGTTGCTGAGAAAG

miRNA*
TTCTCGGTGACCAGATTCTGATT

mismatches: 1
bulges: 2

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pre-miRNA
TTCTTTTCATTTCTGTTTGGTTGCTGAGAAAGCGAGGGAAATTCTCTGAAATTTTCTGTTTTCTTTTTCTTTCTCGGTGACCAGATTCTGATTTTTTAC

dot-bracket secondary structure
...........((.((((((((((((((((((.((((((((......(((...)))...)))))))).))))))))))))))))))...))........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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