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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002431
species: Raphanus sativus var. oleiformis
miRNA family: miR160a
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCGTATGAGGAGCCAAGCATA

miRNA*
TGCCTGGCTCCCTGTATGCCA

mismatches: 2
bulges: 0

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pre-miRNA
CATGATACATATATACATAGTACATATATGCCTGGCTCCCTGTATGCCATACACTAAGCTCATCGACCATCGAGGACTTACGTGGATGGCGTATGAGGAG
CCAAGCATA
TTTTCATATGCATATACATCTTTCT


dot-bracket secondary structure
...(((...(((((.((((......((((((.(((((((.((((((((((.(((((((.((.((((...)))).)))))).))).)))))))))).))))
))).)))))
).....)))).))))).))).....



SIMILARITIES
miRBase bra-MIR160a: 3e-29

PMRD bra-miR160a: 3e-29

microPC miR160: 1e-22
UniProt no hits

RFAM mir-160: 4e-17
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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