miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002433
species: Raphanus sativus var. oleiformis
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGCGCCAATATC

miRNA*
 TATTGGCCTGGTTCACTCAGA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TAGCACGAAAGAGTCCTCTTTGATATTGGCCTGGTTCACTCAGATATTCCAGATAACGCACGCACCACATTCTTTCTCTTAGTTATCTGATTGAGCCGCG
CCAATATCTCAGTGCTCTCTCGTCTCTC

dot-bracket secondary structure
....((((.(((((...((..(((((((((.(((((((.(((((((....(((.((.................)).)))....))))))).))))))).)
))))))))..)).))))).)))).....


SIMILARITIES
miRBase bra-MIR171e: 1e-41

PMRD bra-miR171e: 1e-41

microPC miR171: 0.00000003		UniProt no hits

RFAM MIR171_1: 2e-34		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;