miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002707
species: Thellungiella halophila
miRNA family: MIR838
source: miRNEST

Taxonomy by NCBI:
Thellungiella halophila Thellungiella Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTTTCTTCTTCTTCTTCCACC

miRNA*
 TGGAAGAGTGGAAGATATTG

mismatches: 2
bulges: 1
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pre-miRNA
 AGGTTGTGCTTGTTTCTTCTTCTTCTTCCACCATAACCCGACACAAAGCGGGTTTGGTTCTGCTTCTGGTTTGTGTCGGGTTATGGTGGAAGAGTGGAAG
ATATTGGTCTTCTG

dot-bracket secondary structure
(((....(((.((.((((((..(((((((((((((((((((((((((.((((...(((...))))))).))))))))))))))))))))))))).)))))
).)).)))..))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




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