miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002711
species: Thellungiella halophila
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Thellungiella halophila Thellungiella Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCATCATCATCATCATCATCA

miRNA*
ATGTTGCTGAGGATAGTAGGTA

mismatches: 4
bulges: 1

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pre-miRNA
CACCATCAACACCATCATCATCATCATCATCATCATCATCATCATATTATATTCTTCCATTTGCCAGTTTAACAAAAAAAATGTTGACTCTTCCCAAAAA
TATGTTACAATTACAATCCTAATGATACAATACTAACCCATGAGAAACAAATTGGAGTACACAAAAGAAGGAAAAAAAGAGACAGATATAGAATTGATTG
AAGAAAGAAGGAAAAAAAAAAAAAATCTTGTTTGAAGGGTAACAAGATACTCCACTAAATTTTTAAATGGCAATGCAACAAGATAACTAATTAATGAGGA
TGATGATGTTGCTGAGGATAGTAGGTAATGAAATT


dot-bracket secondary structure
.....(((..(((((.(((.(((.((.((((((((((.((((...((((...((((....((((((..((((((.......)))))).(((((.(((...
((((((..........((((..........((((..((.((.........)).)))))).........))))............))))))...)))...)
)))).(((((..............((((((((........))))))))...........)))))...))))))......))))....))))..)))).))
)))))))).)).))).))).)).)))..)))....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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