miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002436
species: Raphanus sativus var. oleiformis
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCACGATCTA

miRNA*
GATCATGTTTGCAGTTTCACC

mismatches: 2
bulges: 0

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pre-miRNA
CAGGCATCTGATGAAGCTGCCAGCACGATCTAATTAACTTTCTTTCTCCGTTTGTTTTCATGACGATGGAAAGAGATGAGTGTAGATTAGATCATGTTTG
CAGTTTCACC
TGTTGACT


dot-bracket secondary structure
((((.......(((((((((.((((.(((((((((.(((((((((.(((..(((((.....))))).))).))))).))))...))))))))).)))).)
))))))))))
))......



SIMILARITIES
miRBase bra-MIR167c: 3e-32

PMRD bra-miR167c: 3e-32

microPC miR167: 2e-49
UniProt no hits

RFAM MIR167_1: 1e-22
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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