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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002709
species: Thellungiella halophila
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Thellungiella halophila Thellungiella Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCACA

miRNA*
 TGCTCACCTCTCTTTCTGTCAGT

mismatches: 1
bulges: 2
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pre-miRNA
 AGAAATGCAAACAGAGAAAACTGACAGAAGAGAGTGAGCACATGCAGGCACTGTTATGTGTCCATTACTTTGCGTGTGCGTGCTCACCTCTCTTTCTGTC
AGTTGCCTGCCTCTCTCTTTC

dot-bracket secondary structure
........(((.(((((.(((((((((((((((((((((((.((((.(((..((.(((....))).))..))).)))).))))))).))))).)))))))
)))).......))))).))).


SIMILARITIES
miRBase ath-MIR156b: 2e-46

PMRD ath-miRf11143-akr: 2e-46

microPC miR156: 0.000002		UniProt no hits

RFAM mir-156: 4e-35		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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