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Species belonging to selected taxon:

Branchiostoma floridae



ABOUT THIS RECORD

ID: MNEST024641
species: Branchiostoma floridae
miRNA family: let-7
source: miRBase, original name: bfl-let-7a-1 (MI0010516)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGGTTGTATAGTT

miRNA*
CTGTACAACCCGTTACCTTTTT

mismatches: 4
bulges: 0

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pre-miRNA
CTGAGGTGAGGTAGTAGGTTGTATAGTTCAGAAGTACAACATTGGAGATGACTGTACAACCCGTTACCTTTTTTTGGGTCAT

dot-bracket secondary structure
(..(((.(((((((..(((((((((((.((......((....))....)))))))))))))..))))))).)))..).....


SIMILARITIES
miRBase bfl-let-7b: 8e-32

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 9e-32

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"




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