ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: mir-33
source: miRBase, original name: bfl-mir-33-2 (MI0010018)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGCATTGTAGTTGCATTGCAT miRNA* GCAATGTAACTGCAGTGCAGCCC mismatches: 0 bulges: 1 |
pre-miRNA
ACACCTGTTGCTAGGGTGCATTGTAGTTGCATTGCATGTGCAACACAGAAGTGCAATGTAACTGCAGTGCAGCCCAGAGGCAGGAAC
dot-bracket secondary structure
...(((((..((.((((((((((((((((((((((((...(......)..))))))))))))))))))))).)))))..)))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
ACACCTGTTGCTAGGGTGCATTGTAGTTGCATTGCATGTGCAACACAGAAGTGCAATGTAACTGCAGTGCAGCCCAGAGGCAGGAAC
dot-bracket secondary structure
...(((((..((.((((((((((((((((((((((((...(......)..))))))))))))))))))))).)))))..)))))...
SIMILARITIES| miRBase bfl-mir-33-1: 3e-16 PMRD no hits microPC no hits | UniProt no hits RFAM mir-33: 4e-31 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
