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Species belonging to selected taxon:
Branchiostoma floridae
ABOUT THIS RECORD
ID:
MNEST024681
species:
Branchiostoma floridae
miRNA family:
mir-135
source:
miRBase, original name:
bfl-mir-135b-1
(
MI0010689
)
Taxonomy by NCBI:
Branchiostoma floridae
Branchiostoma
Branchiostomidae
Cephalochordata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AATGGCTTTCATCCTTTGTGA
miRNA*
ACACTGATGGGGGTTATTGG
mismatches:
4
bulges:
1
View larger
pre-miRNA
CCGTGTCC
AATGGCTTTCATCCTTTGTGA
ATGTCTGAGCACAGTTC
ACACTGATGGGGGTTATTGG
ACAAGA
dot-bracket secondary structure
...(((((
(((((((..((((...(((((
((((......))).)))
)))..))))..)))))))))
)))...
SIMILARITIES
miRBase
bfl-mir-135b-2
:
2e-35
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
bfl-mir-135b-2
from miRBase (
MNEST024682
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"