miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Branchiostoma floridae



ABOUT THIS RECORD

ID: MNEST024724
species: Branchiostoma floridae
source: miRBase, original name: bfl-mir-2072 (MI0010510)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCAACATCACAGTGACCACAT

miRNA*
GTGAGCACTGCGATGTGGTATT

mismatches: 4
bulges: 0

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pre-miRNA
TCTTGCTGCAACATCACAGTGACCACATAGGCCAGTCAATGTGAGCACTGCGATGTGGTATTAAGATCTGGCCATGCCACAC

dot-bracket secondary structure
(((((.(((.(((((.(((((..(((((.((....)).)))))..))))).))))).))).)))))..((((...))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454

references

[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"




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