miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Branchiostoma floridae



ABOUT THIS RECORD

ID: MNEST024751
species: Branchiostoma floridae
miRNA family: mir-4872
source: miRBase, original name: bfl-mir-4872c-2 (MI0017633)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTCAGGACGACAAAAGCTCTGA

miRNA*
AGAGTTTTGTTGCCCCGACTCC

mismatches: 3
bulges: 1

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pre-miRNA
AGAGGTTCACAAGTGGTGTCAGGACGACAAAAGCTCTGAGTTCTGTTAACATCAGAGTTTTGTTGCCCCGACTCCTTTTGTGGTCA

dot-bracket secondary structure
....(..((((((.((.(((.((.((((((((.(((((((((.....))).)))))))))))))).)).))).)).))))))..).


SIMILARITIES
miRBase bfl-mir-4872c-1: 2e-32

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"




Liczniki na strone;