miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Branchiostoma floridae



ABOUT THIS RECORD

ID: MNEST024769
species: Branchiostoma floridae
miRNA family: mir-4885
source: miRBase, original name: bfl-mir-4885a (MI0017654)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGCTATATTCTTTAGACGTTGT

miRNA*
GACATCTTAAGGATATAGCATA

mismatches: 5
bulges: 0

View larger
pre-miRNA
CTTGAGGATAGGCTATATTCTTTAGACGTTGTATAGTATGTTTTCAAGACATCTTAAGGATATAGCATATCCTTGAGAC

dot-bracket secondary structure
((..((((((.(((((((((((.(((.(((....((.....))....))).))).))))))))))).))))))..))..


SIMILARITIES
miRBase bfl-mir-4885b: 1e-24

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"




Liczniki na strone;