miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Macaca fascicularis, Papio anubis, Macaca nemestrina, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST028177
species: Macaca nemestrina
miRNA family: mir-19
source: miRBase, original name: mne-mir-19b-1 (MI0003023)

Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTGCAAATCCATGCAAAACTGA

miRNA*
AGTTTTGCAGGTTTGCATCCAGC

mismatches: 0
bulges: 4

View larger
pre-miRNA
CACTGTTCTATGGTTAGTTTTGCAGGTTTGCATCCAGCTGTGTGATATTCTGCTGTGCAAATCCATGCAAAACTGACTGTGGTAGTG

dot-bracket secondary structure
(((((..(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))))))))


SIMILARITIES
miRBase age-mir-19b-1: 3e-44

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-19: 2e-29

Identical with: sla-mir-19b-1 from miRBase (MNEST027594)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"




Liczniki na strone;