miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Macaca fascicularis, Papio anubis, Macaca nemestrina, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST028174
species: Macaca nemestrina
miRNA family: mir-17
source: miRBase, original name: mne-mir-17 (MI0003019)

Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACTGCAGTGAAGGCACTTGT

miRNA*
AAGTGCTTACAGTGCAGGTAG

mismatches: 4
bulges: 1

View larger
pre-miRNA
GTCAGAATAATGTCAAAGTGCTTACAGTGCAGGTAGTGATATGTGCATCTACTGCAGTGAAGGCACTTGTAGCATTATGGTGAC

dot-bracket secondary structure
((((..(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))..))))


SIMILARITIES
miRBase age-mir-17: 2e-42

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-17: 2e-26

Identical with: sla-mir-17 from miRBase (MNEST027590)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"




Liczniki na strone;