ABOUT THIS RECORDspecies: Nasonia giraulti
miRNA family: mir-275
source: miRBase, original name: ngi-mir-275 (MI0016627)
Taxonomy by NCBI:
Nasonia giraulti Nasonia Pteromalinae Pteromalidae Chalcidoidea Chaldicoidea group Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGGTACCTGAAGTAGCGCGCG miRNA* CGCGCTACTCCGGTACTTACGACT mismatches: 2 bulges: 3 |
pre-miRNA
GCAACTCGCGCTACTCCGGTACTTACGACTGTGCATTCGATAGTCAGGTACCTGAAGTAGCGCGCGCTGCG
dot-bracket secondary structure
(((.(.((((((((((.(((((((..((((((.......))))))))))))).).))))))))).).))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"
GCAACTCGCGCTACTCCGGTACTTACGACTGTGCATTCGATAGTCAGGTACCTGAAGTAGCGCGCGCTGCG
dot-bracket secondary structure
(((.(.((((((((((.(((((((..((((((.......))))))))))))).).))))))))).).))).
SIMILARITIES| miRBase nlo-mir-275: 7e-35 PMRD no hits microPC no hits | UniProt no hits RFAM mir-275: 1e-33 |
Identical with: nvi-mir-275 from miRBase (MNEST037659) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"
