miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum

ABOUT THIS RECORD

ID: MNEST009779
species: Nippostrongylus brasiliensis
miRNA family: miR-4195
source: miRNEST

Taxonomy by NCBI:
Nippostrongylus brasiliensis Nippostrongylus Nippostrongylinae Heligmonellidae Trichostrongyloidea Strongylida Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
AACATGTAATACATTGTCTTT

miRNA*
ATTTCTGTATTTTGTGTTTT

mismatches: 5
bulges: 1

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pre-miRNA
TTTCTGCTTGGAATTTCTGTATTTTGTGTTTTTGTAATTTTCCAATTCTAAATGCTATGAAACATGTAATACATTGTCTTTTAAGTATTA

dot-bracket secondary structure
....(((((((((....((((((.((((((((.(((.((..........)).)))...)))))))).)))))).....)))))))))...

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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