miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Caenorhabditis elegans
,
Ancylostoma caninum
,
Ascaris suum
,
Heterorhabditis bacteriophora
,
Pristionchus pacificus
,
Caenorhabditis japonica
,
Caenorhabditis brenneri
,
Strongyloides ratti
,
Brugia malayi
,
Meloidogyne hapla
,
Heterodera glycines
,
Meloidogyne incognita
,
Caenorhabditis remanei
,
Onchocerca volvulus
,
Nippostrongylus brasiliensis
,
Meloidogyne chitwoodi
,
Globodera rostochiensis
,
Strongyloides stercoralis
,
Ancylostoma ceylanicum
ABOUT THIS RECORD
ID:
MNEST009242
species:
Pristionchus pacificus
miRNA family:
miR-1410
source:
miRNEST
Taxonomy by NCBI:
Pristionchus pacificus
Pristionchus
Neodiplogasteridae
Diplogasterida
Chromadorea
Nematoda
Pseudocoelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGGACGGAGTCGTGAGGGGAA
miRNA*
ATCTCATCTTTTTGCCCAG
mismatches:
3
bulges:
2
View larger
pre-miRNA
GGGCTTCCGAT
GGGACGGAGTCGTGAGGGGAA
CGGGATTCGAGGGGCAGCTGGCCATATCAGGAAATGCGAAGAGGGCCGCCGAACAGGAATACTATCAG
AATATTCAATTGTACGAGTAGGGCAATCAATAAGTTGTCGATTTCACTCATT
ATCTCATCTTTTTGCCCAG
TTGAACTG
dot-bracket secondary structure
.((.(((...(
(((.(((((..((((((..((
.(((....((..(((.....)))...))..(((((.(((.((..(((((((.(((.(((((.......
..)))))...))).)).))..)))..)).........)))))))).))).))
.))))))..))))))))).
..))))).
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|P30640|BUD13_CAEEL: 0.000004
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record