miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST002705
species: Taraxacum officinale
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Taraxacum officinale Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCGCCCCTG

miRNA*
GGTGCGCCATGAGAACACATG

mismatches: 1
bulges: 2

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pre-miRNA
ACCCCAAAGAATAATGGCAGAGGTATCCGGCAGGTGCGCCATGAGAACACATGTGAAATGTACAATATATTAATTAGGTCATGTCATGTGTTCTCAGGTC
GCCCCTG
CAAGATTTTCCTTTGTCCAAACGTTTGGT


dot-bracket secondary structure
...(((((......(((((((((.(((..(((((.(((((.((((((((((((....(((.((..............)))))..)))))))))))))).)
)).))))
)..)))...)))))).)))....))))).



SIMILARITIES
miRBase vvi-MIR398c: 0.0000004

PMRD vvi-miR398c: 0.0000004

microPC miR398: 4e-38
UniProt no hits

RFAM MIR398: 0.000008
most similar mature miRNAs

Identical with: miR398 from microPC (MNEST046034)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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