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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST051553
species: Pinus taeda
miRNA family: MIR159
source: PMRD, original name: pta-miR159a

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGATTGAAGGGAGCTCCA

miRNA*
 GGAGCTCCCTTCAGTCCAACC

mismatches: 0
bulges: 1
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pre-miRNA
 GATGTGTTGGAGCTCCCTTCAGTCCAACCAAAGCTTGTGCAGCGGTGGTTCAGCTGCTGATTCATGCATTCTACTTCCCTGTCCGTGACTCTCCAGCAGC
CTGAACAAATCAATCAATCGACCTGCATGACAGGATAGTGGTGTGCATGACGCAGGAGATGTACTGTCACTAAACACGCATTTCTTGGATTGAAGGGAGC
TCCACTTATC

dot-bracket secondary structure
((((.((.(((((((((((((((((((..((.((.(((..((.((..((.((.((.(((..((((((((.(((((..((((((..((......))((((.
.(((.............)))..))))..))))))..))))).))))))))..))).)).)).))..)).))..))).)).))..))))))))))))))))
))))).))))


SIMILARITIES
miRBase pta-MIR159a: 3e-117

PMRD pta-miR319: 7e-115

microPC miR319: 2e-108		UniProt no hits

RFAM MIR159: 0.00001

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"



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