ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR166
source: PMRD, original name: pta-miR166a
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGACT mismatches: 4 bulges: 0 |
pre-miRNA
TTGATTGAGGGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCCCCCAATCGG
dot-bracket secondary structure
.((((((.((((((((..((((((..((((..(((((((((((((...)))).)))))))))..))))..))))))..)))))))).)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
TTGATTGAGGGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCCCCCAATCGG
dot-bracket secondary structure
.((((((.((((((((..((((((..((((..(((((((((((((...)))).)))))))))..))))..))))))..)))))))).)))))).
SIMILARITIES| miRBase pta-MIR166a: 2e-48 PMRD vvi-miR166e: 0.000000005 microPC miR166: 7e-39 | UniProt no hits RFAM mir-166: 0.00000008 |
Identical with: pta-MIR166a from miRBase (MNEST039420) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
