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Species belonging to selected taxon:

Cycas rumphii, Zamia vazquezii



ABOUT THIS RECORD

ID: MNEST044879
species: Zamia vazquezii
miRNA family: MIR535
source: microPC, original name: miR535

Taxonomy by NCBI:
Zamia vazquezii Zamia Zamiaceae Cycadales Cycadopsida Cycadophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACGACGAGAGAGAGCACGC

miRNA*
GTGTTCTCGTCCCGTTGTCA

mismatches: 2
bulges: 1

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pre-miRNA
TGACGACGAGAGAGAGCACGCTTGTAGACAATAATATGATTTTGGACGGTTATTACAACGTATTTCTGTGTACATGCGTGTTCTCGTCCCGTTGTCA

dot-bracket secondary structure
.(((((((.((((((((((((.((((.(((..((((((...(((...........)))))))))..))).)))).)))))))))).)).))))))).


SIMILARITIES
miRBase rco-MIR535: 0.00007

PMRD rco-miR535: 0.00007

microPC miR535: 3e-50
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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