miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Bombyx mori, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Antheraea assama, Spodoptera littoralis, Samia cynthia ricini, Danaus plexippus, Papilio xuthus, Ostrinia nubilalis, Trichoplusia ni, Epiphyas postvittana



ABOUT THIS RECORD

ID: MNEST035534
species: Bombyx mori
miRNA family: mir-87
source: miRBase, original name: bmo-mir-87 (MI0008344)

Taxonomy by NCBI:
Bombyx mori Bombyx Bombycinae Bombycidae Bombyciformes Bombycoidea Obtectomera Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGCAAACTTTCAGGTGTGT

miRNA*
GGGCCTGAATCGTTGCTCAGACC

mismatches: 4
bulges: 2

View larger
pre-miRNA
TGAAGAAGTTCGGTACACTAATGGGCCTGAATCGTTGCTCAGACCTGTATTTTCGACCAGGTGAGCAAACTTTCAGGTGTGTTAGTGCCGGCTGGTCTAC
A


dot-bracket secondary structure
.((...(((.(((..((((((((.(((((((...((((((..(((((..........)))))))))))...))))))).))))))))))))))..))...
.



SIMILARITIES
miRBase ame-mir-87-1: 0.00002

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-87: 0.0003

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR, Solexa

references

[1] Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q, BMC Genomics. 11:148(2010)., "MicroRNAs of Bombyx mori identified by Solexa sequencing"
[2] Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y, Insect Biochem Mol Biol. 38:1066-1071(2008)., "Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system"
[3] He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y, BMC Genomics. 9:248(2008)., "Identification and characteristics of microRNAs from Bombyx mori"




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