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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST000167
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAAGACTTTCTAGCATTGCTC

miRNA*
ACAATACTAAAAAGACTTGCA

mismatches: 4
bulges: 0

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pre-miRNA
GTTAAACATATACTCCCTCCGTTTCATAATACAAGACTTTCTAGCATTGCTCATATTTATATATATGTTAATAAATCTAGACACATATTTGTATAGATTT
ACTAACATCTATATGAATATGGACAATACTAAAAAGACTTGCATTATAAAACGGAGGAAGTATATGTTTAC


dot-bracket secondary structure
..((((((((((((.(((((((((.(((((.((((.((((.(((.((((.(((((((((((((.((((((.((((((((.(((......))).)))))))
).)))))).))))))))))))).)))).))).)))).)))).))))).))))))))).)))))))))))).



SIMILARITIES
miRBase osa-MIR819k: 1e-23

PMRD osa-miR819k: 1e-23

microPC miR1130: 4e-20
UniProt no hits

RFAM MIR1122: 1e-42
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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