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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST000601
species: Oryza sativa
miRNA family: MIRf75
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCGAGACGAATCTTTTAAGC

miRNA*
TTAATAAATTCGTCTCGTAGT

mismatches: 3
bulges: 0

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pre-miRNA
ATGGAGTATTNAATGTAGGAAAAAAAGCAATTACACAGATTGCGTGTAAATTGCGAGACGAATCTTTTAAGCCTAATTGCGCCATGATTTAACAATGTGG
TGCTATAGTAAACATTTGCTAATGATGGATTGATTAGGCTTAATAAATTCGTCTCGTAGTTTCTTGGTGGAATCTGTAATTTGTTTTGTTATTAGACTGC
GTTTAATA


dot-bracket secondary structure
......((((.(((((((.((..(((((((....(((((((.((...((((((((((((((((...(((((((((((((..((((.(((....(((((..
(((....))).)))))....))).))))..)))))))))))))...)))))))))))))))).....)).)))))))...))))))).))......))))
))).))))



SIMILARITIES
miRBase osa-MIR2124e: 2e-59

PMRD osa-miR442: 5e-54

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
Source sequences
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