miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lottia gigantea



ABOUT THIS RECORD

ID: MNEST038846
species: Lottia gigantea
miRNA family: let-7
source: miRBase, original name: lgi-let-7 (MI0010143)

Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGGTTGTATAGTT

miRNA*
CTGTACAACCTTCTAGCTTTCC

mismatches: 3
bulges: 0

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pre-miRNA
AATCTTTTGTGAATTCGGATTGAGGTAGTAGGTTGTATAGTTGAGAATTACACCTAGACTGGCGAACTGTACAACCTTCTAGCTTTCCCTGAGTCACAAA
C


dot-bracket secondary structure
.....(((((((.(((((...(((.(((.(((((((((((((........(.((......)).)))))))))))))).))).)))...))))))))))))
.



SIMILARITIES
miRBase pma-let-7a-4: 0.00000000008

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 0.000000000006

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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