miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Macaca fascicularis, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Peromyscus polionotus subgriseus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST032426
species: Mus musculus
miRNA family: mir-1905
source: miRBase, original name: mmu-mir-1905 (MI0008315)

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CACCAGTCCCACCACGCGGTAG

miRNA*
GCTGCTGGATGCGTTTGATGGT

mismatches: 3
bulges: 2

View larger
pre-miRNA
GTGTTGGTCTGCTGCTGGATGCGTTTGATGGTCGCTCCCTTGGGGCCCACCACCAGTCCCACCACGCGGTAGGGTACTCGTA

dot-bracket secondary structure
(.((.(.(((((((((((.((.(.(((.((((.(((((...)))))..)))).))).).))))).)))))))).))).)...


SIMILARITIES
miRBase eca-mir-1905c: 1e-18

PMRD no hits

microPC no hits
UniProt sp|A1L020|MEX3A_HUMAN: 0.0000001

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: microarray, PCR

references

[1] He S, Su H, Liu C, Skogerbo G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R, BMC Genomics. 9:236(2008)., "MicroRNA-encoding long non-coding RNAs"




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