miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040663
species: Medicago truncatula
miRNA family: MIR162
source: miRBase, original name: mtr-MIR162 (MI0001738)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCAG

miRNA*
GGATGCAGCGGTTCATCGATC

mismatches: 2
bulges: 0

View larger
pre-miRNA
AGATGAGGTGAAGTTCGTCACTGGATGCAGCGGTTCATCGATCTGTTCCTGAATTTTGTTTGTCTCGTAAAACAAACATGAATCGGTCGATAAACCTCTG
CATCCAG
CGCTCACTTTCCCCTCT


dot-bracket secondary structure
....((((.(((((..(.(.((((((((((.((((.(((((((.((((.((...(((((((........))))))))).)))).))))))).)))).)))
)))))))
.))..)))))..)))).



SIMILARITIES
miRBase gma-MIR162: 0.000000000000002

PMRD mtr-miR162d: 4e-44

microPC miR162: 4e-44
UniProt no hits

RFAM MIR162_2: 1e-44

Identical with: miR162 from microPC (MNEST046557)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern

references

[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[3] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"




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