miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040669
species: Medicago truncatula
miRNA family: MIR166
source: miRBase, original name: mtr-MIR166b (MI0005575)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCTA

miRNA*
 GGAATGTTGTTTGGCTCGAGG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GTTGATGGGAATGTTGTTTGGCTCGAGGTAATAACTAACTCAATTTCTTTGTCTTTGAAAGCTTTTCTTTGTTTCACTCTTTTTGATTCTTAGAAAGTTG
AAACTAAGTGAGCTTTAAAGGTTTGATTTTGATGTGTGATTATCTCGGACCAGGCTTCATTCCTACCAAC

dot-bracket secondary structure
((((.((((((((..((((((..(((((((((.....((((((..((....((((((((.((((..(((.((((((..((((((((...)))))))).))
)))).))).))))))))))))...))..)))).))...)))))))))..))))))..)))))))).))))


SIMILARITIES
miRBase tcc-MIR166b: 0.000000002

PMRD pga-miR166: 0.00000003

microPC miR166: 0.00003		UniProt no hits

RFAM mir-166: 3e-92

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Bonnet E, Unpublished (2007).,



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