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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040675
species: Medicago truncatula
miRNA family: MIR166
source: miRBase, original name: mtr-MIR166h (MI0005628)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGAATGGTGTCTGATTCGAGA

mismatches: 2
bulges: 0

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pre-miRNA
GTTCAGGGGAATGGTGTCTGATTCGAGACCATTCGTCACAAGTAAACAGTAGCCTTGAGAATGATCTCGGACCAGGCTTCATTCCCCCTAGC

dot-bracket secondary structure
(((..(((((((((.(((((.(((((((.(((((....((((...........)))).))))).))))))).))))).)))))))))..)))


SIMILARITIES
miRBase mtr-MIR166: 3e-47

PMRD mtr-miR165: 3e-41

microPC miR166: 0.00000002
UniProt no hits

RFAM mir-166: 5e-46

Identical with: mtr-miR165 from PMRD (MNEST048711)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Bonnet E, Unpublished (2007).,




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