ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR168
source: miRBase, original name: mtr-MIR168 (MI0005603)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCTTGGTGCTGGTCGGGAA miRNA* CCCGTCTTGCATCAATCGAAT mismatches: 5 bulges: 0 |
pre-miRNA
CTGATTTGCTTGGTGCTGGTCGGGAACCATTACATCCACAGTTTCCGTAGAAACTTTCCCTTAGTAAATTGGACCCCGTCTTGCATCAATCGAATCAG
dot-bracket secondary structure
((((((((.(((((((.((.((((..(((((((......((((((....))))))........))))..)))..)))).)).))))))).))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
CTGATTTGCTTGGTGCTGGTCGGGAACCATTACATCCACAGTTTCCGTAGAAACTTTCCCTTAGTAAATTGGACCCCGTCTTGCATCAATCGAATCAG
dot-bracket secondary structure
((((((((.(((((((.((.((((..(((((((......((((((....))))))........))))..)))..)))).)).))))))).))))))))
SIMILARITIES| miRBase no hits PMRD mtr-miR168: 8e-51 microPC no hits | UniProt no hits RFAM MIR168: 1e-49 |
Identical with: mtr-miR168 from PMRD (MNEST048716) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
