miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040684
species: Medicago truncatula
miRNA family: MIR169
source: miRBase, original name: mtr-MIR169g (MI0005604)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGCCAAGGATGACTTGCCGG

miRNA*
 GGCAAGTCGTCTCTGGCTACG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 ATATGCAGCCAAGGATGACTTGCCGGCGAGCCTCTTTCGATACTTTTATGACATAATTAATCATGTGGATAGCCAAGGTACTAAACTCACTTTGCACTAA
AACAAATATTTTTGCTTTAGTGCAAACTTAGTTTAGGCGCTTCGCAACGGCTAGTCAAATGTCCTAGTTCCAATGTGATTGGTTGTCCGGCAAGTCGTCT
CTGGCTACGTA

dot-bracket secondary structure
.((((.(((((..(((((((((((((((((.....)))).............(((((((((((((((((..((.(((((.(((((((.(.((((((((((
(.((((....)))).))))))))))).).))))))))).))).))....(((((.........)))))))).))))))))))))))))))))))))))).
.))))).))))


SIMILARITIES
miRBase gma-MIR169a: 0.0000002

PMRD gma-miR169a: 0.0000002

microPC miR169: 0.00001		UniProt no hits

RFAM MIR169_2: 1e-116

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Bonnet E, Unpublished (2007).,



Liczniki na strone;