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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040698
species: Medicago truncatula
miRNA family: MIR171
source: miRBase, original name: mtr-MIR171d (MI0005619)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATATC

miRNA*
TATTGGCCTGGTTCACTCAGA

mismatches: 2
bulges: 0

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pre-miRNA
AATGAGATATTGGCCTGGTTCACTCAGACCAAGTGATAAACCACTAAGATACAGTATTGTACTTGTGTGGTTTTGGGTTTGATTGAGCCGTGCCAATATC
TCACT


dot-bracket secondary structure
..((((((((((((.(((((((.(((((((.......(((((((((((.(((......))))))).)))))))..))))))).))))))).)))))))))
)))..



SIMILARITIES
miRBase mtr-MIR171g: 6e-55

PMRD mtr-miR171g: 6e-55

microPC miR171: 0.00000000000009
UniProt no hits

RFAM MIR171_1: 1e-53

Identical with: mtr-miR171d from PMRD (MNEST048722)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern

references

[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"




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