ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR398
source: miRBase, original name: mtr-MIR398a (MI0005599)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTT miRNA* GGAGTGACACTGAGAACACAAG mismatches: 1 bulges: 1 |
pre-miRNA
TCTCAGAGGAGTGACACTGAGAACACAAGATTGATTAATCATATAATGTATTTGGTTGTTACTAGTTGATTTTGTGTTCTCAGGTCACCCCTTTGAGT
dot-bracket secondary structure
.((((((((.(((((.(((((((((((((((..((((.....(((((.......)))))...))))..)))))))))))))))))))).)))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
TCTCAGAGGAGTGACACTGAGAACACAAGATTGATTAATCATATAATGTATTTGGTTGTTACTAGTTGATTTTGTGTTCTCAGGTCACCCCTTTGAGT
dot-bracket secondary structure
.((((((((.(((((.(((((((((((((((..((((.....(((((.......)))))...))))..)))))))))))))))))))).)))))))).
SIMILARITIES| miRBase vvi-MIR398a: 0.00000002 PMRD vvi-miR398a: 0.00000002 microPC miR398: 0.0000003 | UniProt no hits RFAM MIR398: 1e-49 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
