ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR399
source: miRBase, original name: mtr-MIR399a (MI0001749)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCAG miRNA* GGGTGAGTTCTCCATTGGCAGG mismatches: 4 bulges: 1 |
pre-miRNA
TCCAAGTTGCAGTTGAATTACAGGGTGAGTTCTCCATTGGCAGGTAGCTAGTCACTATATGATATGCATTGCAATCATTTCTTAGTGTGCAATCTGCCAA
AGGAGATTTGCCCAGCGATTCTCCTGCAACTCTA
dot-bracket secondary structure
....((((((((..((((..(.(((..(((.((((.(((((((((.((....(((((.(((((.(((...))))))))....))))).)).)))))))))
.)))))))..))).)..))))..))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
TCCAAGTTGCAGTTGAATTACAGGGTGAGTTCTCCATTGGCAGGTAGCTAGTCACTATATGATATGCATTGCAATCATTTCTTAGTGTGCAATCTGCCAA
AGGAGATTTGCCCAGCGATTCTCCTGCAACTCTA
dot-bracket secondary structure
....((((((((..((((..(.(((..(((.((((.(((((((((.((....(((((.(((((.(((...))))))))....))))).)).)))))))))
.)))))))..))).)..))))..))))))))...
SIMILARITIES| miRBase mtr-MIR399e: 3e-60 PMRD mtr-miR399a: 4e-72 microPC miR399: 0.000000000002 | UniProt no hits RFAM mir-399: 1e-50 |
Identical with: mtr-miR399a from PMRD (MNEST048750) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
