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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040734
species: Medicago truncatula
miRNA family: MIR399
source: miRBase, original name: mtr-MIR399d (MI0001744)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGAGCTGCCCTA

miRNA*
GGGCATGTCTCTATTGGCAGG

mismatches: 3
bulges: 0

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pre-miRNA
TAAAGTAAGCAAATCAGTCATAGGGCATGTCTCTATTGGCAGGTGATATGGTGATATTTCATTTGACTTTAAGGCTCTAAAAATTCACTTGCCAAAGGAG
AGCTGCCCTA
CGAGTGTTTAGCTTAAACA


dot-bracket secondary structure
.....(((((.((.((.((.(((((((..(((((.(((((((((((...(((((....))))).((((....)).)).......))))))))))).))))
)..)))))))
.)).)).)).)))))....



SIMILARITIES
miRBase mtr-MIR399n: 2e-49

PMRD mtr-miR399d: 3e-69

microPC miR399: 0.0004
UniProt no hits

RFAM mir-399: 0.0001

Identical with: mtr-miR399d from PMRD (MNEST048753)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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