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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040735
species: Medicago truncatula
miRNA family: MIR399
source: miRBase, original name: mtr-MIR399e (MI0001750)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGATTTGCCCAG

miRNA*
GGGTGAGTTCTCCATTGGCAGG

mismatches: 4
bulges: 1

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pre-miRNA
TCCAAGTTGCAGTTGAATTACAGGGTGAGTTCTCCATTGGCAGGTAGCTAGCCACTATATGATATGCATTGCAATCATCACTTAGTGTGTAATCTGCCAA
AGGAGATTTGCCCAG
CGATTCTCATGCAACTCTA


dot-bracket secondary structure
....(((((((...((((..(.(((..(((.((((.(((((((((.((....(((((..((((.(((...)))...))))..))))).)).)))))))))
.)))))))..))).)
..))))...)))))))...



SIMILARITIES
miRBase mtr-MIR399a: 3e-60

PMRD mtr-miR399e: 4e-72

microPC miR399: 0.00000003
UniProt no hits

RFAM mir-399: 1e-59

Identical with: mtr-miR399e from PMRD (MNEST048754)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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