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Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Glycine soja
,
Glycyrrhiza uralensis
,
Lotus japonicus
,
Medicago sativa
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Trifolium pratense
,
Cajanus cajan
,
Cicer arietinum
,
Glycine max
,
Vigna unguiculata
,
Medicago truncatula
,
Phaseolus vulgaris
ABOUT THIS RECORD
ID:
MNEST040735
species:
Medicago truncatula
miRNA family:
MIR399
source:
miRBase, original name:
mtr-MIR399e
(
MI0001750
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGATTTGCCCAG
miRNA*
GGGTGAGTTCTCCATTGGCAGG
mismatches:
4
bulges:
1
View larger
pre-miRNA
TCCAAGTTGCAGTTGAATTACA
GGGTGAGTTCTCCATTGGCAGG
TAGCTAGCCACTATATGATATGCATTGCAATCATCACTTAGTGTGTAATC
TGCCAA
AGGAGATTTGCCCAG
CGATTCTCATGCAACTCTA
dot-bracket secondary structure
....(((((((...((((..(.
(((..(((.((((.((((((((
(.((....(((((..((((.(((...)))...))))..))))).)).)))
))))))
.)))))))..))).)
..))))...)))))))...
SIMILARITIES
miRBase
mtr-MIR399a
:
3e-60
PMRD
mtr-miR399e
:
4e-72
microPC
miR399
:
0.00000003
UniProt
no hits
RFAM
mir-399: 1e-59
Identical with:
mtr-miR399e
from PMRD (
MNEST048754
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Dezulian T, Palatnik JF, Huson DH, Weigel D,
http://genomebiology.com/2005/6/11/p13 (2005).
,
"Conservation and divergence of microRNA families in plants"