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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST008398
species: Medicago truncatula
miRNA family: MIR393
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCAAAGGGATCGCATTGTTT

miRNA*
GCTTGCGAATCTTTTTGCATC

mismatches: 2
bulges: 2

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pre-miRNA
CCTCGCACGACGACATCCAAAGGGATCGCATTGTTTCATACTTCCCTATGTCTGTTAGAAGCGCCGTGTCTCCGAAAGGACAGTCTCTAATCTCAAGCTT
GCGAATCTTTTTGCATC
CGTTCAATACAT


dot-bracket secondary structure
........((((..((.(((((((((((((..((((............(((((.((.((.((.....)).)).))..)))))............)))).)
))).))))))))).)).
))))........



SIMILARITIES
miRBase sbi-MIR393: 0.0004

PMRD vvi-miR393b: 0.0004

microPC no hits
UniProt sp|Q9LW29|AFB2_ARATH: 0.000000000000002

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
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