miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST008402
species: Medicago truncatula
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATATATAGGGACGGAGGGAG

miRNA*
CCCTCCGTCCCTAATTATAAG

mismatches: 4
bulges: 0

View larger
pre-miRNA
TACGGCCGGGCCCTCCGTCCCTAATTATAAGACCCTTTTGAGAATTTTTTTTGTCCCTTTTTATAAGACCCCTTTGTTATTTCCAACTACATTAATTATT
TCTTTACATACATGCCCCTATTTATTATACATCTTTTTCTTCAATCAACAATAAATATCATGTTGAAAAAATAAACTAACCTTCTTTCTTAAAGGATAAA
ATTGTTAAAACAATAGTGATTACAAACAACTTTAATACAAATATTCACTATCTTAATTCCCGCGATTTCGGCAAAAGGGTCTTATATATAGGGACGGAGG
GAG
TACATGC


dot-bracket secondary structure
....((....(((((((((((((..(((((((((((((((.(((.((.((((((((...((((.((((.......(((..................((((
(.((((...(((((....((((((((.......................)))))))).))))))))).))))))))......))))...)))))))))))
)..(((((....(((((((.((...................)).))))))).)))))......)).)))..)))))))))))))))..))))))))))))
).)
)......



SIMILARITIES
miRBase no hits

PMRD osa-miRf11808-akr: 0.00006

microPC no hits
UniProt no hits

RFAM MIR1122: 0.00002
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;