miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST008409
species: Medicago truncatula
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGGATTGAAGGGAGCTCTA

miRNA*
 GAGCTTCCTTTAGTCCAAATA

mismatches: 0
bulges: 0
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pre-miRNA
 TGATGTTAGGGTTTAAAGGGGTGGAGCTTCCTTTAGTCCAAATATGGATCTTGCTATGTTGATAGAGCTGCTTAGCTATGGGTCCCTCAACTCTACCCAT
CTTGTTCTTTGTGGTAGTTTTGTGGCTTCCATATCTAGGGAGCCTTATCACCTTTAGTTTAATCTTTCTTTGGATTGAAGGGAGCTCTACATCTTGCTCT
CTTACTTTA

dot-bracket secondary structure
.((.((.((((....((((.((((((((((((((((((((((...((((...((((...((((((.(((.(((((.((((((..((.(((..(((((((.
.........)).)))))..))).))..)))))).))))).))).))))))....))))...))))...)))))))))))))))))))))).))))...))
)).)).)).


SIMILARITIES
miRBase mtr-MIR159a: 4e-101

PMRD mtr-miR159a: 3e-92

microPC miR159: 3e-92		UniProt no hits

RFAM MIR159: 0.00000001		most similar mature miRNAs

Identical with: miR159 from microPC (MNEST045638)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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