miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST001440
species: Lotus japonicus
miRNA family: miR160c
source: miRNEST

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCGTACAAGGAGCCAAGCATG

miRNA*
 TGCCTGGCTCCCTGTATGCCA

mismatches: 2
bulges: 0
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pre-miRNA
 TTTTGGTATTTTGTTATTTGTTTATTAGCATACTTTGTGTGCCTGGCTCCCTGTATGCCATTTGTAGAGCACATCACCACGGTGATGGCCTAATGAATGG
CGTACAAGGAGCCAAGCATGCTGTGTGTTGCTATTTAGCTTCTACAAATTTCTTAT

dot-bracket secondary structure
....((...(((((...(((..((.((((((((...((((((.(((((((.((((((((((((((((.((.((((((....)))))))))).))))))))
)))))).))))))).)))))).)))))))).))..))).....)))))...))...


SIMILARITIES
miRBase mtr-MIR160d: 0.00000000000003

PMRD mtr-miR160d: 0.00000000000003

microPC miR160: 0.00000000003		UniProt no hits

RFAM mir-160: 0.00000000001		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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