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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040657
species: Medicago truncatula
miRNA family: MIR159
source: miRBase, original name: mtr-MIR159a (MI0010696)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTA

miRNA*
GAGCTTCCTTTAGTCCAAATA

mismatches: 0
bulges: 0

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pre-miRNA
GGGGTGGAGCTTCCTTTAGTCCAAATATGGATCTTGCTATGTTGATAGAGCTGCTTAGCTATGGGTCCCTCAACTCTACCCATCTTGTTCTTTGTGGTAG
TTTTGTGGCTTCCATATCTAGGGAGCCTTATCACCTTTAGTTTAATCTTTCTTTGGATTGAAGGGAGCTCTACATCTTGCTCT


dot-bracket secondary structure
(..((((((((((((((((((((((...((((...((((.(.((((((.(((.(((((.((((((..((.(((..(((((((..........)).)))))
..))).))..)))))).))))).))).)))))).)..))))...))))...))))))))))))))))))))))..).......



SIMILARITIES
miRBase pvu-MIR159a: 0.00000000001

PMRD mtr-miR159a: 3e-92

microPC miR159: 3e-92
UniProt no hits

RFAM MIR159: 0.00000001

Identical with: miR159 from microPC (MNEST045638)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"




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