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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040660
species: Medicago truncatula
miRNA family: MIR160
source: miRBase, original name: mtr-MIR160c (MI0005576)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGAATGCCA

miRNA*
GCATGAAGGGAGCCATGCAGG

mismatches: 3
bulges: 0

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pre-miRNA
TCGCTTGCCTGGCTCCCTGAATGCCATCTGAGAAGCTTGTCAAAACGATTGGCAACCTTTCCATTTGGCATGAAGGGAGCCATGCAGGCTGC

dot-bracket secondary structure
..((((((.(((((((((..((((((..((..(((.(((((((.....))))))).)))..))..))))))..))))))))).))))))...


SIMILARITIES
miRBase ptc-MIR160e: 0.000000000000001

PMRD ptc-miR160e: 0.000000000000001

microPC no hits
UniProt no hits

RFAM mir-160: 5e-43

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Bonnet E, Unpublished (2007).,




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