ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR164
source: miRBase, original name: mtr-MIR164b (MI0005612)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CATGTGCCCCTCTTCCCCATC mismatches: 5 bulges: 0 |
pre-miRNA
CAAGATGGAGAAGCAGGGCACGTGCAATACTAACTCATGAACATACACACATGATGGAAGTGAATACAAAGAGAATCTACATTCTCTTATGTTTCATTTT
TTTAATTGAGTTAGTTCTTCATGTGCCCCTCTTCCCCATCATGA
dot-bracket secondary structure
((.(((((.((((..(((((((((....(((((((((....(((......)))..(((((((((.(((((((((((....)))))))).)))))))))))
).....)))))))))....)))))))))..)))).))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
CAAGATGGAGAAGCAGGGCACGTGCAATACTAACTCATGAACATACACACATGATGGAAGTGAATACAAAGAGAATCTACATTCTCTTATGTTTCATTTT
TTTAATTGAGTTAGTTCTTCATGTGCCCCTCTTCCCCATCATGA
dot-bracket secondary structure
((.(((((.((((..(((((((((....(((((((((....(((......)))..(((((((((.(((((((((((....)))))))).)))))))))))
).....)))))))))....)))))))))..)))).))))).)).
SIMILARITIES| miRBase ptc-MIR164e: 0.0000000000005 PMRD mtr-miR164b: 2e-65 microPC miR164: 0.000000000002 | UniProt no hits RFAM MIR164: 3e-64 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
